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Virus World provides a daily blog of the latest news in the Virology field and the COVID-19 pandemic. News on new antiviral drugs, vaccines, diagnostic tests, viral outbreaks, novel viruses and milestone discoveries are curated by expert virologists. Highlighted news include trending and most cited scientific articles in these fields with links to the original publications. Stay up-to-date with the most exciting discoveries in the virus world and the last therapies for COVID-19 without spending hours browsing news and scientific publications. Additional comments by experts on the topics are available in Linkedin (https://www.linkedin.com/in/juanlama/detail/recent-activity/)
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Limiting Indoor Capacity Can Reduce Coronavirus Infections, Study Shows - The New York Times

Limiting Indoor Capacity Can Reduce Coronavirus Infections, Study Shows - The New York Times | Virus World | Scoop.it

Research using cellphone data in 10 U.S. cities last spring could help influence officials’ decisions on new restrictions as cases resurge around the country. Restaurants, gyms, cafes and other crowded indoor venues accounted for some 8 in 10 new infections in the early months of the U.S. coronavirus epidemic, according to a new analysis that could help officials around the world now considering curfews, partial lockdowns and other measures in response to renewed outbreaks. The study, which used cellphone mobility data from 10 U.S. cities from March to May, also provides an explanation for why many low-income neighborhoods were hardest hit. The public venues in those communities were more crowded than in more affluent ones, and residents were more mobile on average, likely because of work demands, the authors said in the research published in the journal Nature on Tuesday. The data came from the metro areas of Atlanta, Chicago, Dallas, Houston, Los Angeles, Miami, New York, Philadelphia, San Francisco and Washington, D.C. Infectious disease models had provided similar estimates of the risk posed by crowded indoor spaces, going back to February; all such models are subject to uncertainties, due largely to unforeseen changes in community behavior. The new analysis provides more precise estimates for how much each kind of venue contributed to urban outbreaks, by tracking hourly movements and taking into account the reductions in mobility from lockdown restrictions or other changes that occurred during those first crucial months. It did not model infection in schools or office workplaces.

 

“Restaurants were by far the riskiest places, about four times riskier than gyms and coffee shops, followed by hotels” in terms of new infections, said Jure Leskovec, a computer scientist at Stanford University and senior author of the new report, in a conference call with reporters. The study was a collaboration between scientists at Stanford, Northwestern University, Microsoft Research and the Chan Zuckerberg Biohub. Public officials across Europe and in parts of the United States, including Gov. Phil Murphy of New Jersey, have begun to institute partial closures of restaurants and bars, or limited indoor hours, as new infections have surged in recent weeks. In New York City, a spike in virus cases threatens the city’s recovery and could mean “a lot more restrictions,” Mayor Bill de Blasio said on Monday. These measures are especially important in lower income areas, the new study suggests. Infections exploded in many such communities last spring, and the new model provides one likely explanation: Local venues tend to be more crowded than elsewhere.

 

The researchers looked closely at grocery stores, to understand differences between high and low income communities. In eight of the ten cities, transmission rates were twice as high in low as in higher income areas. The mobility data pointed at one reason: Grocers in low-income neighborhoods had almost 60 percent more people per square foot; shoppers tended to stay there longer as well. And residents are apparently less able to shelter at home. “We think a big reason for that is that essential workers had to be on the job, they weren’t working from home,” said Serina Chang, a co-author also at Stanford. In the analysis, the research team mapped the hourly mobility of some 98 million people to and from indoor public spaces, like grocery stores, churches, hotels and bars. It calculated the traffic to each venue over the course of a day, how long people stayed on average, and the place’s square footage. Given a background infection rate, the researchers then ran the model forward — “hit play,” said Dr. Chang, and watched how infections spread and where, using standard infectious disease assumptions....

 

Study cited published in Nature (Nov. 10, 2020):

https://doi.org/10.1038/s41586-020-2923-3

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US Lockdown Protests May Have Spread Virus Widely, Cellphone Data Suggests 

US Lockdown Protests May Have Spread Virus Widely, Cellphone Data Suggests  | Virus World | Scoop.it

Devices associated with protesters travelled up to hundreds of miles after rallies where few precautions were taken. Cellphone location data suggests that demonstrators at anti-lockdown protests – some of which have been connected with Covid-19 cases – are often traveling hundreds of miles to events, returning to all parts of their states, and even crossing into neighboring ones. The data, provided to the Guardian by the progressive campaign group the Committee to Protect Medicare, raises the prospect that the protests will play a role in spreading the coronavirus epidemic to areas which have, so far, experienced relatively few infections. The anonymized location data was captured from opt-in cellphone apps, and data scientists at the firm VoteMap used it to determine the movements of devices present at protests in late April and early May in five states: Michigan, Wisconsin, Illinois, Colorado and Florida.

 

They then created visualizations that tracked the movements of those devices up to 48 hours after the conclusion of protests. The visualizations only show movements within states, due to the queries analysts made in creating them. But the data scientist Jeremy Fair, executive-vice president of VoteMap, says that many of the devices that are seen to reach state borders are seen to continue across them in the underlying raw data. One visualization shows that in Lansing, Michigan, after a 30 April protest in which armed protesters stormed the capitol building and state police were forced to physically block access to Governor Gretchen Whitmer, devices which had been present at the protest site can be seen returning to all parts of the state, from Detroit to remote towns in the state’s north.

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