Virus World
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Virus World
Virus World provides a daily blog of the latest news in the Virology field and the COVID-19 pandemic. News on new antiviral drugs, vaccines, diagnostic tests, viral outbreaks, novel viruses and milestone discoveries are curated by expert virologists. Highlighted news include trending and most cited scientific articles in these fields with links to the original publications. Stay up-to-date with the most exciting discoveries in the virus world and the last therapies for COVID-19 without spending hours browsing news and scientific publications. Additional comments by experts on the topics are available in Linkedin (https://www.linkedin.com/in/juanlama/detail/recent-activity/)
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Chronic Wasting Disease (CWD) Detected in New Part of Utah - CIDRAP

Chronic Wasting Disease (CWD) Detected in New Part of Utah - CIDRAP | Virus World | Scoop.it

The Utah Division of Wildlife Resources (DWR) last week confirmed the first case of chronic wasting disease (CWD) in Payson, located in Utah County in the central part of the state. The confirmed case was 1 of 26 positive CWD cases, including 25 deer and one elk, identified from July 1 to November 28. Most of the cases were from the northeastern part of the state, but Payson is a new area for CWD, DWR officials said. Eighteen of the animals were harvested by hunters, five were found dead, and three were sick animals that were euthanized by the DWR.

Disease appears to be spreading

"We can't accurately compare each year's positive cases to determine how fast the disease is spreading because we sample different areas of the state each year that have different prevalence; alternatively, we compare each unit from year to year," DWR State Wildlife Veterinarian Ginger Stout, DVM, said in a DWR press release. "However, we are finding the disease in new areas, so unfortunately, it does appear to be spreading in Utah." CWD was first detected in a mule deer in northeastern Utah in 2022. A total of 188 mule deer and four elk have tested positive for the disease, which is a fatal neurologic condition found in deer and other cervids. Caused by misfolded proteins called prions, CWD is similar to bovine spongiform encephalopathy ("mad cow" disease). Although no human cases of CWD have been found in Utah or elsewhere, infected cervids can shed prions in urine, feces, and saliva, and transmission may occur through direct contact with an infected animal or indirectly through environmental contamination. Health officials urge people to avoid eating the meat of infected animals and to take precautions when field-dressing or butchering cervids.

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SARS-CoV-2 Exposure in Wild White-tailed Deer (Odocoileus virginianus) | bioRxiv

SARS-CoV-2 Exposure in Wild White-tailed Deer (Odocoileus virginianus) | bioRxiv | Virus World | Scoop.it

Widespread human SARS-CoV-2 infections combined with human-wildlife interactions create the potential for reverse zoonosis from humans to wildlife. We targeted white-tailed deer (Odocoileus virginianus) for serosurveillance based on evidence these deer have ACE2 receptors with high affinity for SARS-CoV-2, are permissive to infection, exhibit sustained viral shedding, can transmit to conspecifics, and can be abundant near urban centers. We evaluated 624 pre- and post-pandemic serum samples from wild deer from four U.S. states for SARS-CoV-2 exposure. Antibodies were detected in 152 samples (40%) from 2021 using a surrogate virus neutralization test. A subset of samples was tested using a SARS-CoV-2 virus neutralization test with high concordance between tests. These data suggest white-tailed deer in the populations assessed have been exposed to SARS-CoV-2.

 

Preprint available in bioRxiv (July 29, 2021):

 https://doi.org/10.1101/2021.07.29.454326 

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White-Tailed Deer  May Serve as a Wildlife Reservoir for Nearly Extinct SARS-CoV-2 Variants of Concern

White-Tailed Deer  May Serve as a Wildlife Reservoir for Nearly Extinct SARS-CoV-2 Variants of Concern | Virus World | Scoop.it

Significance

This comprehensive cross-sectional study demonstrates widespread infection of WTD with SARS-CoV-2 across the State of New York. We showed cocirculation of three major SARS-CoV-2 variants of concern (VOCs; Alpha, Delta, and Gamma) in this species, long after their last detection in humans. Interestingly, the viral sequences recovered from WTD were highly divergent from SARS-CoV-2 sequences recovered from humans, suggesting rapid adaptation of the virus in WTD. The impact of these mutations on the transmissibility of the virus between WTD and from WTD to humans remains to be determined. Together, our findings indicate that WTD—the most abundant large mammal in North America—may serve as a reservoir for variant SARS-CoV-2 strains that no longer circulate in the human population.
 

Abstract

The spillover of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) from humans to white-tailed deer (WTD) and its ability to transmit from deer to deer raised concerns about the role of WTD in the epidemiology and ecology of the virus. Here, we present a comprehensive cross-sectional study assessing the prevalence, genetic diversity, and evolution of SARS-CoV-2 in WTD in the State of New York (NY). A total of 5,462 retropharyngeal lymph node samples collected from free-ranging hunter-harvested WTD during the hunting seasons of 2020 (Season 1, September to December 2020, n = 2,700) and 2021 (Season 2, September to December 2021, n = 2,762) were tested by SARS-CoV-2 real-time RT–PCR (rRT-PCR). SARS-CoV-2 RNA was detected in 17 samples (0.6%) from Season 1 and in 583 samples (21.1%) from Season 2. Hotspots of infection were identified in multiple confined geographic areas of NY. Sequence analysis of SARS-CoV-2 genomes from 164 samples demonstrated the presence of multiple SARS-CoV-2 lineages and the cocirculation of three major variants of concern (VOCs) (Alpha, Gamma, and Delta) in WTD. Our analysis suggests the occurrence of multiple spillover events (human to deer) of the Alpha and Delta lineages with subsequent deer-to-deer transmission and adaptation of the viruses. Detection of Alpha and Gamma variants in WTD long after their broad circulation in humans in NY suggests that WTD may serve as a wildlife reservoir for VOCs no longer circulating in humans. Thus, implementation of continuous surveillance programs to monitor SARS-CoV-2 dynamics in WTD is warranted, and measures to minimize virus transmission between humans and animals are urgently needed.
 
Published in PNAS (Jan. 31, 2023):
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Susceptibility of White-Tailed Deer (Odocoileus virginianus) to SARS-CoV-2 

Susceptibility of White-Tailed Deer (Odocoileus virginianus) to SARS-CoV-2  | Virus World | Scoop.it

The origin of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus causing the global coronavirus disease 19 (COVID-19) pandemic, remains a mystery. Current evidence suggests a likely spillover into humans from an animal reservoir. Understanding the host range and identifying animal species that are susceptible to SARS-CoV-2 infection may help to elucidate the origin of the virus and the mechanisms underlying cross-species transmission to humans.

 

Here we demonstrated that white-tailed deer (Odocoileus virginianus), an animal species in which the angiotensin converting enzyme 2 (ACE2) - the SARS-CoV-2 receptor - shares a high degree of similarity to humans, are highly susceptible to infection. Intranasal inoculation of deer fawns with SARS-CoV-2 resulted in established subclinical viral infection and shedding of infectious virus in nasal secretions. Notably, infected animals(Jan. 14, 2021 transmitted the virus to non-inoculated contact deer. Viral RNA was detected in multiple tissues 21 days post-inoculation (pi). All inoculated and indirect contact animals seroconverted and developed neutralizing antibodies as early as day 7 pi. The work provides important insights into the animal host range of SARS-CoV-2 and identifies white-tailed deer as a susceptible wild animal species to the virus.

 

Preprint available in bioRxiv (Jan. 14, 2021):

https://doi.org/10.1101/2021.01.13.426628

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