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Virus World provides a daily blog of the latest news in the Virology field and the COVID-19 pandemic. News on new antiviral drugs, vaccines, diagnostic tests, viral outbreaks, novel viruses and milestone discoveries are curated by expert virologists. Highlighted news include trending and most cited scientific articles in these fields with links to the original publications. Stay up-to-date with the most exciting discoveries in the virus world and the last therapies for COVID-19 without spending hours browsing news and scientific publications. Additional comments by experts on the topics are available in Linkedin (https://www.linkedin.com/in/juanlama/detail/recent-activity/)
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Alarming 45-fold Rise in Measles in Europe - WHO

Alarming 45-fold Rise in Measles in Europe - WHO | Virus World | Scoop.it

Urgent measures are needed now to stop further spread, the World Health Organization says. Health chiefs are warning that cases are still rising and "urgent measures" are needed to prevent further spread. Some 42,200 people were infected in 2023, compared to 941 during the whole of 2022. The WHO believes this is a result of fewer children being vaccinated against the disease during the Covid pandemic. In the UK, health officials said last week that an outbreak of highly contagious measles in the West Midlands could spread rapidly to other towns and cities with low vaccination rates. More than 3.4 million children under the age of 16 are unprotected and at risk of becoming ill from the disease, according to NHS England. Millions of parents and carers are being contacted and urged to make an appointment to ensure their children are fully vaccinated against measles. The measles, mumps and rubella (MMR) vaccine is given in two doses - the first around the age of one and the second when a child is about three years and four months old. The vaccine is very effective at protecting against measles, but only 85% of children starting primary school in the UK have had both jabs.

 

 

Speaking about the situation in Europe, Dr Hans Kluge, regional director at the WHO, said: "We have seen, in the region, not only a 30-fold increase in measles cases, but also nearly 21,000 hospitalisations and five measles-related deaths. This is concerning. "Vaccination is the only way to protect children from this potentially dangerous disease." Measles can be a serious illness at any age. It often starts with a high fever and a rash, which normally clears up within 10 days - but complications can include pneumonia, meningitis, blindness and seizures. Babies who are too young to have been given their first dose of vaccine, pregnant women and those who have weakened immune systems are most at risk. During pregnancy, measles can lead to stillbirth, miscarriage and a baby being born with a low birth weight. All countries in the European region are being asked to detect and respond to measles outbreaks quickly, alongside giving vaccines to more people. The WHO said measles had affected all age groups last year - young and old alike. Overall, two in five cases were in children aged 1-4, and one in five cases were in adults aged 20 and above. Between January and October 2023, 20,918 people across Europe were admitted to hospital with measles. In two countries, five measles-related deaths were also reported.

Pandemic effect

Vaccination rates for the first dose of the MMR vaccine, which protects against measles, slipped from 96% in 2019 to 93% in 2022 across Europe. Uptake of the second dose fell from 92% to 91% over the same period. That seemingly small drop in vaccination take-up means more than 1.8 million children in Europe missed a measles vaccination during those two years. "The Covid-19 pandemic significantly impacted immunisation system performance in this period, resulting in an accumulation of un-[vaccinated] and under-vaccinated children," the WHO reported. With international travel booming once again, and social-distancing measures removed, the risk of measles spreading across borders and within communities is much greater - especially within under-vaccinated populations, it said. Even countries that have achieved measles elimination status are at risk of large outbreaks, the WHO warned. It says that 95% of children need to be vaccinated with two doses against measles in all communities to prevent the spread of the highly-contagious disease.

 
 
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‘Rapidly Accelerating’ Measles Outbreak Kills Almost 700 Children in Zimbabwe

‘Rapidly Accelerating’ Measles Outbreak Kills Almost 700 Children in Zimbabwe | Virus World | Scoop.it

The flare-up of one of the world’s most infectious diseases has taken hold among church congregations that have rejected vaccinations.  A measles outbreak in Zimbabwe has now killed nearly 700 children, in a rapidly accelerating and “deeply concerning” flare-up of the highly contagious disease.  Health officials told the Telegraph they were alarmed by both the speed of the spread and the high fatality rate of the outbreak, which has seen the recent death toll jump by dozens each day. The flare-up of one of the world’s most infectious diseases has taken hold among church congregations that have rejected vaccinations for religious reasons. Deaths had reached 698 by September 4, according to the nation’s health ministry, up from less than a quarter of that a fortnight earlier. Officials reported that 37 children died on September 1 alone.  The outbreak is thought to be the worst for some time in the southern African nation of 15 million. The last outbreak 11 years ago was far less severe, health sources told the Telegraph. Unicef said that in the worst affected eastern province of Manicaland, nearly one-in-10 of those getting the disease were dying. That rate is higher than in other recent African outbreaks. The UN body said it was “deeply concerned with the numbers of cases and deaths among children due to a measles outbreak in Zimbabwe”. Cases first emerged in April and the virus has since spread quickly among congregations of Zimbabwe’s Apostolic churches, who have long rejected vaccinations and modern medicine.

Faith healers and anti-vaxxers

Dr Johannes Marisa, the president of the Medical and Dental Private Practitioners of Zimbabwe Association, told The Associated Press that the government may need to force children to be vaccinated. He said: “Because of the resistance, education may not be enough so the government should also consider using coercive measures to ensure that no one is allowed to refuse vaccination for their children.” He urged the government to “consider enacting legislation that makes vaccination against killer diseases such as measles mandatory”.  Zimbabwe’s Cabinet has already invoked a law used to respond to disasters to deal with the outbreak and has launched a mass vaccination campaign, which will target two million children under five years. Nationwide, the vaccination rate was around 85 per cent in 2020, having fallen back on previous years when it at times touched 95 per cent.  The country’s Apostolic churches or sects are thought to be followed by around one-in-five of the population. Their teachings regularly include a potent mix of opposition towards Western medicine and belief in faith healing and prayer, meaning the congregations have become a stronghold of anti-vaccination sentiment.  As the outbreak has worsened and pressure has mounted, some church leaders have in recent weeks appeared to change their stance and called on followers to get their children vaccinated. The virus causes fever, coughing and a tell-tale rash, but in some cases it causes complications that can be fatal. Complications include blindness, brain swelling, severe diarrhoea and dehydration, ear infections, or severe respiratory infections such as pneumonia. It is one of the world’s most contagious diseases, with a reproduction rate as high as 18 – compared to an R rate of between 2 and 3 for the original strain of Covid.  Before mass vaccinations began in the 1960s, the disease flared up in occasional epidemics, killing an estimated 2.6m children each year. More than 140,000 people died from measles in 2018 – mostly children under the age of five years, despite the availability of a safe and effective vaccine, according to the World Health Organization. The virus is so contagious that more than 90 per cent of the population needs to be immunised to prevent outbreaks.

 
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Epidemics That Weren’t: How Countries Shut Down Recent Outbreaks - The New York Times

Epidemics That Weren’t: How Countries Shut Down Recent Outbreaks - The New York Times | Virus World | Scoop.it

Some of the most fragile health systems in the world can teach us ways to respond to public health threats early and effectively. Stephanie Nolen, a global health reporter, has reported on pandemics around the world, including H.I.V., cholera and yellow fever.

 

When Ebola swept through the eastern Democratic Republic of Congo in 2018, it was a struggle to track cases. Dr. Billy Yumaine, a public health official, recalls steady flows of people moving back and forth across the border with Uganda while others hid sick family members in their homes because they feared the authorities. It took at least a week to get test results, and health officials had difficulty isolating sick people while they waited.

It took two years for the country to bring that outbreak under control, and more than 2,300 people died. A similar disaster threatened the D.R.C. last September. Members of a family in North Kivu Province fell ill with fevers, vomiting and diarrhea, one after the other. Then their neighbors became sick, too. But that set off a series of steps that the D.R.C. put in place after the 2018 outbreak. The patients were tested, the cases were quickly confirmed as a new outbreak of Ebola and, right away, health workers traced 50 contacts of the families. Then they fanned out to test possible patients at health centers and screened people at the busy border posts, stopping anyone with symptoms of the hemorrhagic fever. Local labs that had been set up in the wake of the previous outbreak tested more than 1,800 blood samples. It made a difference: This time, Ebola claimed just 11 lives. “Those people died, but we kept it to 11 deaths, where in the past we lost thousands,” Dr. Yumaine said. You probably didn’t hear that story. You probably didn’t hear about the outbreak of deadly Nipah virus that a doctor and her colleagues stopped in southern India last year, either. Or the rabies outbreak that threatened to race through nomadic Masai communities in Tanzania. Quick-thinking public health officials brought it in check after a handful of children died.

 

Over the past couple of years, the headlines and the social feeds have been dominated by outbreaks around the world. There was Covid, of course, but also mpox (formerly known as monkeypox), cholera and resurgent polio and measles. But a dozen more outbreaks flickered, threatened — and then were snuffed out. While it may not feel that way, we have learned a thing or two about how to do this, and, sometimes, we get it right. A report by the global health strategy organization Resolve to Save Lives documented six disasters that weren’t. All emerged in developing countries, including those that, like the D.R.C., have some of the most fragile health systems on earth. While cutting-edge vaccine technology and genomic sequencing have received lots of attention in the Covid years, the interventions that helped prevent these six pandemics were steadfastly unglamorous: building the trust of communities in the local health system. Training local staff in how to report a suspected problem effectively. Making sure funds are available to dispense swiftly, to deploy contact tracers or vaccinate a village against rabies. Increasing lab capacity in areas far from the main urban centers. Priming everyone to move fast at the first sign of potential calamity. “Outbreaks don’t occur because of a single failure, they occur because of a series of failures,” said Dr. Tom Frieden, the chief executive of Resolve and a former director of the United States Centers for Disease Control and Prevention. “And the epidemics that don’t happen don’t happen because there are a series of barriers that will prevent them from happening. ” Dr. Yumaine told me that a key step that made a difference in shutting down Congo’s Ebola outbreak in 2021 was having local health officials in each community trained in the response. The Kivu region has lived through decades of armed conflict and insecurity, and its population faces a near-constant threat of displacement. In previous public health emergencies, when people were told they would have to isolate because of Ebola exposure, they feared it was a trick to move them off their land.

 

“In the past, it was always people from Kinshasa who were coming with these messages,” he said, referring to the country’s capital. But this time, the instructions about lockdowns and isolation came from trusted sources, so people were more willing to listen and be tested. “We could give local control to local people because they were trained,” he said. Because labs had been set up in the region, people with suspected Ebola could be tested in a day — two, at most — instead of waiting a week or more for samples to be sent more than 1,600 miles to Kinshasa. In the State of Kerala in southern India, Dr. Chandni Sajeevan, the head of emergency medicine at Kozhikode Government Medical College hospital, led the response to an outbreak of Nipah, a virus carried by fruit bats, in 2018. Seventeen of the 18 people infected died, including a young trainee nurse who cared for the first victims. “It was something very frightening,” Dr. Chandni said. The hospital staff got a crash course in intensive infection control, dressing up in the “moon suits” that seemed so foreign in the pre-Covid era. Nurses were distraught over the loss of their colleague. Three years later, in 2021, Dr. Chandni and her team were relieved when the bat breeding season passed with no infections. And then, in May, deep into India’s terrible Covid wave, a 12-year-old boy with a high fever was brought to a clinic by his parents. That clinic was full, so he was sent to the next, and then to a third, where he tested negative for Covid. But an alert clinician noticed that the child had developed encephalitis. He sent a sample to the national virology lab. It swiftly confirmed that this was a new case of Nipah virus. By then, the child could have exposed several hundred people, including dozens of health workers. The system Dr. Chandni and her colleagues had put in place after the 2018 outbreak kicked into gear: isolation centers, moon suits, testing anyone with a fever for Nipah as well as Covid. She held daily news briefings to quell rumors and keep the public on the lookout for people who might be ill — and away from bats and their droppings, which litter coconut groves where children play. Teams were sent out to catch bats for surveillance. Everyone who had been exposed to the sick boy was put into 21 days of quarantine. “Everyone, ambulance drivers, elevator operators, security guards — this time, they knew about Nipah and how to behave not to spread it,” she said. Amanda McLelland, who leads epidemic prevention at Resolve, told me that when she heard of new Ebola cases in Guinea in West Africa in 2021, she feared disaster. An outbreak that began in Guinea in 2014 had spread to two neighboring countries, and by the time it was declared over two years later, nearly 30,000 people had been infected and 11,325 had died. But this time, although Guinea was already struggling to respond to Covid, it managed to bring the Ebola outbreak in check in six months, with just 11 deaths. “That was a fantastic example of learning those lessons and investing and building sustainably in the capacity,” Ms. McLelland said. It should be celebrated, she added. While public health failures, such as those in the face of Covid, receive plenty of attention, she said, “our success is invisible.”

 

Nevertheless, progress can be fitful: A new Ebola outbreak is slowly being brought under control in Uganda, and neighboring nations have watched it with concern. Dr. Frieden said he was discouraged to see this, because Uganda has a strong public health system with a track record of detecting and responding to outbreaks quickly. “I think what we’re seeing there is the unfortunate harvest of Covid. Covid broke a lot of things,” he said. “It broke health care worker resilience, it broke the willingness of many people to follow public health advice, it broke trust in the health care system and communities that was there before. Progress is possible, but it’s also fragile.” But Dr. Yumaine said he had growing confidence that even if Ebola were to spill back across the border from Uganda, the D.R.C. could respond swiftly, with surveillance systems that grow better all the time. “We’re encouraged by our improvements,” he said. “But we’re not stopping there.”

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An Ancient Viral Epidemic Involving Host Coronavirus Interacting Genes More than 20,000 Years Ago in East Asia

An Ancient Viral Epidemic Involving Host Coronavirus Interacting Genes More than 20,000 Years Ago in East Asia | Virus World | Scoop.it

Souilmi et al. find that strong genetic adaptation occurred in human East Asian populations, at multiple genes that interact with coronaviruses, including SARS-CoV-2. The adaptation
started 25,000 years ago, and functional analysis of the adapting genes supports the occurrence of a corona- or related virus epidemic around that time in East Asia.

 

Highlights

 

  • Ancient viral epidemics can be identified through adaptation in host genomes
  • Genomes in East Asia bear the signature of an ∼25,000-year-old viral epidemic
  • Functional analysis supports an ancient corona- or related virus epidemic

Summary The current severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has emphasized the vulnerability of human populations to novel viral pressures, despite the vast array of epidemiological and biomedical tools now available. Notably, modern human genomes contain evolutionary information tracing back tens of thousands of years, which may help identify the viruses that have impacted our ancestors—pointing to which viruses have future pandemic potential. Here, we apply evolutionary analyses to human genomic datasets to recover selection events involving tens of human genes that interact with coronaviruses, including SARS-CoV-2, that likely started more than 20,000 years ago. These adaptive events were limited to the population ancestral to East Asian populations. Multiple lines of functional evidence support an ancient viral selective pressure, and East Asia is the geographical origin of several modern coronavirus epidemics. An arms race with an ancient coronavirus, or with a different virus that happened to use similar interactions as coronaviruses with human hosts, may thus have taken place in ancestral East Asian populations. By learning more about our ancient viral foes, our study highlights the promise of evolutionary information to better predict the pandemics of the future. Importantly, adaptation to ancient viral epidemics in specific human populations does not necessarily imply any difference in genetic susceptibility between different human populations, and the current evidence points toward an overwhelming impact of socioeconomic factors in the case of coronavirus disease 2019 (COVID-19).

 

Published in Current Biology (June 24, 2021): https://doi.org/10.1016/j.cub.2021.05.067

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