Virus World
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Virus World
Virus World provides a daily blog of the latest news in the Virology field and the COVID-19 pandemic. News on new antiviral drugs, vaccines, diagnostic tests, viral outbreaks, novel viruses and milestone discoveries are curated by expert virologists. Highlighted news include trending and most cited scientific articles in these fields with links to the original publications. Stay up-to-date with the most exciting discoveries in the virus world and the last therapies for COVID-19 without spending hours browsing news and scientific publications. Additional comments by experts on the topics are available in Linkedin (https://www.linkedin.com/in/juanlama/detail/recent-activity/)
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Omicron Sublineage BQ.1.1 Resistance to Monoclonal Antibodies

Omicron Sublineage BQ.1.1 Resistance to Monoclonal Antibodies | Virus World | Scoop.it

Vaccination represents the key strategy to control the COVID-19 pandemic through induction of neutralising antibody responses and T cell-associated immunity that substantially decrease the risk of developing severe disease.  However, individuals who are immunocompromised (eg, because of comorbidities, high age, or immunosuppressive treatment) might not mount a full adaptive immune response and thus remain susceptible. For individuals at high risk, individual monoclonal antibodies (mAbs) or cocktails of mAbs are administered as prophylaxis or therapy.  All mAbs currently approved by the US Food and Drug Administration (FDA) or European Medicines Agency (EMA) target the spike (S) protein.  During the course of the COVID-19 pandemic, several SARS-CoV-2 lineages evolved mutations that confer partial or full resistance against some mAbs. Consequently, only few mAbs remain suitable for treatment of individuals at high risk, and only bebtelovimab shows high efficacy against multiple omicron sublineages. However, novel omicron sublineages have been detected, harbouring additional S protein mutations within the epitopes of bebtelovimab and other mAbs. Novel sublineages include BA.4.6 (with increasing incidence in several countries worldwide), BA.2.75.2 (with increasing incidence in India), BJ.1 (mainly observed in India and Bangladesh; notably BJ.1 is one parental lineage of the currently increasing XBB recombinant), and BQ.1.1 (with increasing incidence in the USA and Europe).

 

We compared neutralisation of omicron sublineages BA.1, BA.4–5 (in which the amino acid sequence of the S protein is identical), BA.4.6, BA.2.75.2, BJ.1 and BQ.1.1 by single mAbs or mAb cocktails that are currently in clinical use, mAbs for which clinical use has been restricted or discontinued, and mAbs currently being evaluated in clinical trials. We used pseudovirus particles  that represent a suitable model to investigate SARS-CoV-2 cell entry and its neutralisation. As we expected, pseudovirus particles bearing the BA.1 S protein (BA.1pp) were efficiently neutralised by bebtelovimab, adintrevimab, and cilgavimab–tixagevimab (50% effective concentration [EC50] <100 ng/ml), moderately neutralised by tixagevimab, romlusevimab, sotrovimab, and amubarvimab–romlusevimab (EC50 100–1000 ng/ml), and poorly neutralised by casirivimab, cilgavimab, amubarvimab, and casirivimab–imdevimab (EC50 1000–10 000 ng/ml). Furthermore, BA4–5 were efficiently neutralised by bebtelovimab and cilgavimab, moderately neutralised by imdevimab and cilgavimab–tixagevimab, and poorly neutralised by amubarvimab, romlusevimab, sotrovimab, casirivimab–imdevimab, and amubarvimab–romlusevimab, in line with expectations. 
 
For BA.4.6, bebtelovimab caused efficient neutralisation, whereas poor neutralisation was noted for imdevimab, amubarvimab, casirivimab–imdevimab, cilgavimab–tixagevimab, and amubarvimab–romlusevimab. With BA.2.75.2, bebtelovimab caused efficient neutralisation, whereas regdanvimab and sotrovimab caused poor neutralisation. For BJ.1pp, none of the tested mAbs or mAb cocktails caused high neutralisation, whereas casirivimab, tixagevimab, sotrovimab, and cilgavimab–tixagevimab showed moderate neutralisation, and amubarvimab, casirivimab–imdevimab, and amubarvimab–romlusevimab caused poor neutralisation. Finally, none of the tested mAbs or mAb cocktails caused appreciable neutralisation of BQ.1.1pp. Our data reveal that emerging omicron sublineages are resistant to most (ie, BA.4.6, BA.2.75.2, and BJ.1) or all (BQ.1.1) clinically used mAbs. As a consequence, in patients at high risk, treatment with mAbs alone might not provide a therapeutic benefit in regions of the globe in which BQ.1.1 is spreading, suggesting that additional treatment options (eg, paxlovid or molnupiravir) should be considered. Furthermore, novel, broadly active mAbs are urgently needed for prophylactic or therapeutic treatment, or both, in patients at high risk...
 
Published in the Lancet (Nov. 18, 2022):
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Bispecific Antibodies Targeting Distinct Regions of the Spike Protein Potently Neutralize SARS-CoV-2 Variants of Concern

Bispecific Antibodies Targeting Distinct Regions of the Spike Protein Potently Neutralize SARS-CoV-2 Variants of Concern | Virus World | Scoop.it

The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants of concern threatens the efficacy of existing vaccines and therapeutic antibodies and underscores the need for additional antibody-based tools that potently neutralize variants by targeting multiple sites of the spike protein. We isolated 216 monoclonal antibodies targeting SARS-CoV-2 from plasmablasts and memory B cells collected from patients with coronavirus disease 2019. The three most potent antibodies targeted distinct regions of the receptor binding domain (RBD), and all three neutralized the SARS-CoV-2 Alpha and Beta variants. The crystal structure of the most potent antibody, CV503, revealed that it binds to the ridge region of SARS-CoV-2 RBD, competes with the angiotensin-converting enzyme 2 receptor, and has limited contact with key variant residues K417, E484, and N501.

 

We designed bispecific antibodies by combining nonoverlapping specificities and identified five bispecific antibodies that inhibit SARS-CoV-2 infection at concentrations of less than 1 ng/ml. Through a distinct mode of action, three bispecific antibodies cross-linked adjacent spike proteins using dual N-terminal domain–RBD specificities. One bispecific antibody was greater than 100-fold more potent than a cocktail of its parent monoclonals in vitro and prevented clinical disease in a hamster model at a dose of 2.5 mg/kg. Two bispecific antibodies in our panel comparably neutralized the Alpha, Beta, Gamma, and Delta variants and wild-type virus. Furthermore, a bispecific antibody that neutralized the Beta variant protected hamsters against SARS-CoV-2 expressing the E484K mutation. Thus, bispecific antibodies represent a promising next-generation countermeasure against SARS-CoV-2 variants of concern.

 

Published in Science Translational Medicine (Sept. 2021):

https://doi.org/10.1126/scitranslmed.abj5413 

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Broadly Neutralizing Antibodies Overcome SARS-CoV-2 Omicron Antigenic Shift | bioRxiv

Broadly Neutralizing Antibodies Overcome SARS-CoV-2 Omicron Antigenic Shift | bioRxiv | Virus World | Scoop.it

The recently emerged SARS-CoV-2 Omicron variant harbors 37 amino acid substitutions in the spike (S) protein, 15 of which are in the receptor-binding domain (RBD), thereby raising concerns about the effectiveness of available vaccines and antibody therapeutics. Here, we show that the Omicron RBD binds to human ACE2 with enhanced affinity relative to the Wuhan-Hu-1 RBD and acquires binding to mouse ACE2. Severe reductions of plasma neutralizing activity were observed against Omicron compared to the ancestral pseudovirus for vaccinated and convalescent individuals.

 

Most (26 out of 29) receptor-binding motif (RBM)-directed monoclonal antibodies (mAbs) lost in vitro neutralizing activity against Omicron, with only three mAbs, including the ACE2-mimicking S2K146 mAb, retaining unaltered potency. Furthermore, a fraction of broadly neutralizing sarbecovirus mAbs recognizing antigenic sites outside the RBM, including sotrovimab, S2X259 and S2H97, neutralized Omicron. The magnitude of Omicron-mediated immune evasion and the acquisition of binding to mouse ACE2 mark a major SARS-CoV-2 mutational shift. Broadly neutralizing sarbecovirus mAbs recognizing epitopes conserved among SARS-CoV-2 variants and other sarbecoviruses may prove key to controlling the ongoing pandemic and future zoonotic spillovers.

 

Preprint Available at bioRxiV (Dec. 14, 2021):

https://doi.org/10.1101/2021.12.12.472269

 

Vir Biotechnology Press Release (Dec. 14, 2021):

https://investors.vir.bio/news-releases/news-release-details/preclinical-data-highlight-significant-antigenic-shift-omicron 

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