bioinformatics-databases

A database of nucleic acids-protein interactions.

Validate macromolecular 3D structures.

A repository for data from NMR Spectroscopy.

SUPERSWEET is a database to find information about natural and artificial sweeteners.

Search and analyze glycosyltransferases with this database from the Consortium for Functional Glycomics.

Search for glycan binding proteins with this database from the Consortium for Functional Glycomics.

Search for databases and tools for glycobiology and glycomics.

Search for information on bacterial carbohydrate structures.

The PHYRE automatic fold recognition server for predicting the structure and/or function of your protein sequence.

The Allele Frequency Net Database (AFND) provides a central source, freely available to all, for the storage of allele frequencies from different polymorphic areas in the Human Genome. Users can contribute the results of their work into one common database and can perform database searches on information already available.

Database of three-dimensional interacting domains (3did) is a database of protein interactions having a known three-dimensional structures. The current version of 3did is based on Pfam release 24 and HMMER version 3(beta).

Target recognition and expression mechanism of intrinsically disordered protein

NDB is a database of three-dimensional structural information about nucleic acids.

Perform stochastic folding simulations of nucleic acids.

DNAlive displays DNA structure features in relation with genome annotations and functions.

3D-DART allows you to generated 3D structural models of DNA from a sequence a base-pair step parameter file or another DNA starting structure.

With GlycomeDB it is possible to get an overview of all carbohydrate structures in the different databases and to crosslink common structures in the different databases. Scientists are now able to search for a particular structure in the meta database and get information about the occurrence of this structure in the five carbohydrate structure databases.

The Glycan Structures Database offers detailed structural and chemical information for thousands of glycans, including both synthetic glycans and glycans isolated from biological sources. Each glycan structure in the database is linked to relevant entries in CFG and external databases (including primary data and information about binding proteins, where available). Links are also provided to a 3-D modeling feature, references, and other information.

GlyNest and CASPER -- two independent approaches to estimate 1H and 13C NMR shifts of glycans available through a common web-interface

The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

Analysis of Dynamics of Elastic Network Model (AD-ENM) predicts the conformational changes a given protein structure can undergo.

The AmoebaDB is a functional genomics database for the genetics of amoebozoa.

The DeathDomain database is a manually curated database that aims to provide comprehensive information on PPIs of human DD superfamily. The current version of the Death Domain Database documents 175 PPI pairs among 99 DDS by curating 295 peer-reviewed publications.