Genetic Engineering Publications - GEG Tech top picks
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An RNA-targeting CRISPR–Cas13d system alleviates disease-related phenotypes in Huntington’s disease models | Nature Neuroscience

An RNA-targeting CRISPR–Cas13d system alleviates disease-related phenotypes in Huntington’s disease models | Nature Neuroscience | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
Huntington’s disease (HD) is a fatal, dominantly inherited neurodegenerative disorder caused by CAG trinucleotide expansion in exon 1 of the huntingtin (HTT) gene. Since the reduction of pathogenic mutant HTT messenger RNA is therapeutic, we developed a mutant allele-sensitive CAGEX RNA-targeting CRISPR–Cas13d system (Cas13d–CAGEX) that eliminates toxic CAGEX RNA in fibroblasts derived from patients with HD and induced pluripotent stem cell-derived neurons. We show that intrastriatal delivery of Cas13d–CAGEX via an adeno-associated viral vector selectively reduces mutant HTT mRNA and protein levels in the striatum of heterozygous zQ175 mice, a model of HD. This also led to improved motor coordination, attenuated striatal atrophy and reduction of mutant HTT protein aggregates. These phenotypic improvements lasted for at least eight months without adverse effects and with minimal off-target transcriptomic effects. Taken together, we demonstrate proof of principle of an RNA-targeting CRISPR–Cas13d system as a therapeutic approach for HD, a strategy with implications for the treatment of other dominantly inherited disorders. Leveraging RNA-targeting CRISPR–Cas13d technology, Morelli et al. engineered a novel therapeutic strategy that safely and effectively eliminates toxic expanded huntingtin RNA in multiple models of Huntington’s disease.
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Huntington's disease (HD) is a neurological disorder that causes progressive loss of movement, coordination and cognitive function. It is caused by a mutation in a single gene called huntingtin or HTT. In a new study, published Dec. 12, 2022, in Nature Neuroscience, researchers describe the use of CRISPR/Cas13d RNA-targeting technology to develop a new therapeutic strategy that specifically removes the toxic RNA that causes HD. They used viral vehicles to deliver the therapy to neuronal cultures, which were developed from stem cells derived from patients with HD, and found that the approach not only targeted and destroyed mutant RNA molecules, but also eliminated the accumulation of toxic proteins. They also demonstrated that the expression of other human genes was generally not disrupted by the therapy.

Race&Herd's comment, January 19, 2023 12:08 AM
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CRISPR-mediated live imaging of genome editing and transcription | Science

CRISPR-mediated live imaging of genome editing and transcription | Science | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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Fluorescence in situ hybridization (FISH) is a powerful molecular technique for detecting nucleic acids in cells. However, it requires cell fixation and denaturation. Wang et al. found that CRISPR-Cas9 protects guide RNAs from degradation in cells only when bound to target DNA. Taking advantage of this target-dependent stability switch, they developed a labeling technique, named CRISPR LiveFISH, to detect DNA and RNA using fluorophore-conjugated guide RNAs with Cas9 and Cas13, respectively. CRISPR LiveFISH improves the signal-to-noise ratio, is compatible with living cells, and allows tracking real-time dynamics of genome editing, chromosome translocation, and transcription.

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The identification and characterization of a thermophilic Cas13a ortholog highly active at the temperatures required for RT-LAMP

The identification and characterization of a thermophilic Cas13a ortholog highly active at the temperatures required for RT-LAMP | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
Researchers developed a new detection assay for SARS-CoV-2.
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In a recent study published in Proceedings of the National Academy of Sciences, researchers developed a new assay for the detection of SARS-CoV-2. For the test, CRISPR systems were coupled to loop-mediated isothermal amplification (LAMP) or recombinase polymerase (RPA) amplification to boost sensitivity and improve detection at attomolar levels. In addition, reverse transcription (RT)-RPA/LAMP systems coupled with Cas13 systems have been developed for the detection of SARS-CoV-2. RT-LAMP has become the preferred method due to its high sensitivity, low cost and ease of use. Since these systems use functional Cas enzymes at 37°C and LAMP requires high temperatures (55°C to 65°C), the RT-LAMP/RPA assays coupled with CRISPR. The multiplexed assay therefore has a thermophilic Cas13a isolated from Thermoclostridium caenicola (TccCas13a) and uses it for the detection of SARS-CoV-2 using fluorescent amidite-labelled RNA and has developed an AapCas12b-based RNase P detection using HEX-labelled ssDNA reporters. The researchers achieved simultaneous detection of RNase P and SARS-CoV-2 without any interference from the fluorescence signals. A mobile phone application was developed to collect and interpret the fluorescence viewer readings at low cost. 

 

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