Genetic Engineering Publications - GEG Tech top picks
36.6K views | +0 today
Follow
Genetic Engineering Publications - GEG Tech top picks
Your new post is loading...
Your new post is loading...
Scooped by BigField GEG Tech
Scoop.it!

Exon skipping induced by CRISPR-directed gene editing regulates the response to chemotherapy in non-small cell lung carcinoma cells | Gene Therapy

Exon skipping induced by CRISPR-directed gene editing regulates the response to chemotherapy in non-small cell lung carcinoma cells | Gene Therapy | Genetic Engineering Publications - GEG Tech top picks | Scoop.it

We have been developing CRISPR-directed gene editing as an augmentative therapy for the treatment of non-small cell lung carcinoma (NSCLC) by genetic disruption of Nuclear Factor Erythroid 2-Related Factor 2 (NRF2). NRF2 promotes tumor cell survival in response to therapeutic intervention and thus its disablement should restore or enhance effective drug action. Here, we report how NRF2 disruption leads to collateral damage in the form of CRISPR-mediated exon skipping. Heterogeneous populations of transcripts and truncated proteins produce a variable response to chemotherapy, dependent on which functional domain is missing. We identify and characterize predicted and unpredicted transcript populations and discover that several types of transcripts arise through exon skipping; wherein one or two NRF2 exons are missing. In one specific case, the presence or absence of a single nucleotide determines whether an exon is skipped or not by reorganizing Exonic Splicing Enhancers (ESEs). We isolate and characterize the diversity of clones induced by CRISPR activity in a NSCLC tumor cell population, a critical and often overlooked genetic byproduct of this exciting technology. Finally, gRNAs must be designed with care to avoid altering gene expression patterns that can account for variable responses to solid tumor therapy.

BigField GEG Tech's insight:

 There is a pervasive sense of hopelessness in these non-small cell lung cancer (NSCLC) patients due to the current lack of treatment options, treatment failure due to drug resistance, and poor survival rates. Chemotherapy resistance is a major challenge in the treatment of NSCLC. Nuclear factor erythroid 2-related factor 2 (NRF2) may be at the root of this resistance. It is a master regulator of hundreds of other genes involved in numerous cytoprotective and metabolic pathways. Under normal physiological conditions, NRF2 protects cells from oxidative stress, toxic attacks and chemotherapy, keeping cells in homeostasis. Cancer cells hijack the NRF2 pathway and disrupt this function. When NRF2 becomes over-expressed and accumulates in the cell, the cell is able to fight off these toxic insults. This is really where the cancer becomes chemoresistant. Advanced patients have much higher levels of NRF2. However, in a paper published last month in Gene Therapy, a research team describes a new anti-cancer strategy that uses CRISPR-Cas9 to eliminate NRF2. The key finding of the study is that CRISPR-based disruption of NRF2 can lead to exon skipping. A dual sgRNA approach to target exon 4 resulted in the deletion of a 103-base-pair fragment, including exonic splice enhancer sequences. 

No comment yet.
Scooped by BigField GEG Tech
Scoop.it!

CRISPR-Cpf1 correction of muscular dystrophy mutations in human cardiomyocytes and mice

CRISPR-Cpf1 correction of muscular dystrophy mutations in human cardiomyocytes and mice | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
BigField GEG Tech's insight:

In this study, the scientists deployed Cpf1 to correct DMD mutations in patient-derived induced pluripotent stem cells (iPSCs) and mdx mice, an animal model of DMD. Cpf1-mediated genomic editing of human iPSCs, either by skipping of an out-of-frame DMD exon or by correcting a nonsense mutation, restored dystrophin expression after differentiation to cardiomyocytes and enhanced contractile function. Similarly, pathophysiological hallmarks of muscular dystrophy were corrected in mdx mice following Cpf1-mediated germline editing. These findings are the first to show the efficiency of Cpf1-mediated correction of genetic mutations in human cells and an animal disease model and represent a significant step toward therapeutic translation of gene editing for correction of DMD.

No comment yet.
Scooped by BigField GEG Tech
Scoop.it!

Convergence of Acquired Mutations and Alternative Splicing of CD19 Enables Resistance to CART-19 Immunotherapy

Convergence of Acquired Mutations and Alternative Splicing of CD19 Enables Resistance to CART-19 Immunotherapy | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
BigField GEG Tech's insight:

The scientists detected hemizygous deletions spanning the CD19 locus and de novo frameshift and missense mutations in exon 2 of CD19 in some relapse samples. Using genome editing, they demonstrated that exon 2 skipping bypasses exon 2 mutations in B-ALL cells and allows expression of the N-terminally truncated CD19 variant, which fails to trigger killing by CART-19 but partly rescues defects associated with CD19 loss. Thus, this mechanism of resistance is based on a combination of deleterious mutations and ensuing selection for alternatively spliced RNA isoforms.


www.geg-tech.com/Vectors

No comment yet.
Scooped by BigField GEG Tech
Scoop.it!

News: Simplest Possible Modification Rescues Dystrophin Expression in Duchenne

News: Simplest Possible Modification Rescues Dystrophin Expression in Duchenne | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
Editing a single nucleotide in the largest human gene is sufficient to restore dystrophin production and myocyte function in Duchenne muscular dystrophy. The new research uses base editing and prime editing that only nicks a single strand of DNA and reduces the risk of damaging genetic changes.
BigField GEG Tech's insight:

To restore dystrophin production and myocyte function in patients with Duchenne muscular dystrophy (DMD), several CRISPR strategies have been tried to correct some of the hundreds of thousands of documented mutations in the dystrophin gene (DMD). Among these strategies, researchers at the University of Texas Southwestern Medical Center in Dallas, Texas, have developed a novel CRISPR gene editing strategy for DMD therapy. This was tested in animal and human DMD models where the researchers deleted exon 51 in the DMD gene which disrupted the dystrophin reading frame and generated a premature stop codon in exon 52. The researchers were able to restore the reading frame with both basic and main editing by introducing exon skipping and reframing, respectively, through their "single-swap" ABE strategy, i.e., through editing a single letter in the splice acceptor or donor site can cause exon skipping. The researchers targeted the splice acceptor or splice donor site of exon 50 or 52 and the single nucleotide modification restored dystrophin expression in human cardiomyocytes and contractile function was normalized using master editing. However, one challenge is the high doses required to deliver expression throughout the body.

No comment yet.
Scooped by BigField GEG Tech
Scoop.it!

Efficient Restoration of the Dystrophin Gene Reading Frame and Protein Structure in DMD Myoblasts Using the CinDel Method

Efficient Restoration of the Dystrophin Gene Reading Frame and Protein Structure in DMD Myoblasts Using the CinDel Method | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
BigField GEG Tech's insight:

In this study, the authors present here the CRISPR-induced deletion (CinDel), a new promising genome-editing technology to correct the DMDgene. Using an adequate pair of gRNAs, the deletion of parts of these exons and the intron separating them restored the DMDreading frame in 62% of the hybrid exons in vitro in DMD myoblasts and in vivo in electroporated hDMD/mdx mice. Given that CinDel induces permanent reparation of the DMDgene, this treatment would not have to be repeated as it is the case for exon skipping induced by oligonucleotides.

No comment yet.