Genetic Engineering Publications - GEG Tech top picks
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New genetic system analyzes the underlying mechanisms of CRISPR-based DNA repair outcomes

New genetic system analyzes the underlying mechanisms of CRISPR-based DNA repair outcomes | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
Since its breakthrough development more than a decade ago, CRISPR has revolutionized DNA editing across a broad range of fields.
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Researchers have developed a new genetic system to test and analyze the mechanisms underlying the results of CRISPR-based DNA repair. As described in Nature Communications, they have developed a sequence analyzer to help track on- and off-target mutational changes and how they are inherited from one generation to the next. The tool, called Integrated Classifier Pipeline (ICP), can reveal specific categories of mutations resulting from CRISPR editing. Developed in flies and mosquitoes, ICP provides a "fingerprint" of how genetic material is inherited, enabling scientists to track the source of mutational changes and the associated risks emerging from potentially problematic modifications. PKI can help unravel the complex biological issues that arise when determining the mechanisms behind CRISPR. Although developed in insects, ICP has great potential for human applications.

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High-fidelity CRISPR–Cas9 nucleases with no detectable genome-wide off-target effects - Nature

High-fidelity CRISPR–Cas9 nucleases with no detectable genome-wide off-target effects - Nature | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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In the present study, the authors describe SpCas9-HF1, a high-fidelity variant harbouring alterations designed to reduce non-specific DNA contacts. SpCas9-HF1 retains on-target activities comparable to wild-type SpCas9 with >85% of single-guide RNAs (sgRNAs) tested in human cells. Notably, with sgRNAs targeted to standard non-repetitive sequences, SpCas9-HF1 rendered all or nearly all off-target events undetectable by genome-wide break capture and targeted sequencing methods. These results suggest a general strategy for optimizing genome-wide specificities of other CRISPR-RNA-guided nucleases.



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