Genetic Engineering Publications - GEG Tech top picks
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A simple optogenetic MAPK inhibitor design reveals resonance between transcription-regulating circuitry and temporally-encoded inputs

A simple optogenetic MAPK inhibitor design reveals resonance between transcription-regulating circuitry and temporally-encoded inputs | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
Light-sensitive regulators of protein kinases could offer valuable insights into intracellular signalling.
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Researchers at the Turku Centre for Biotechnology have invented new tools to decode and control signalling circuits in living cells with flashes of light. In principle, any cellular circuit can now be targeted with their method. Using this approach, they discovered that major biological signalling circuits can be made to resonate when driven at their resonant frequency

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Optogenetic inhibition of behavior with anion channelrhodopsins 

Optogenetic inhibition of behavior with anion channelrhodopsins  | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
Anion channelrhodopsins are light-sensitive chloride channels that can be used as optogenetic inhibitors. Mohammad et al. report their application in Drosophila, showing that various behaviors can be inhibited in a light-dependent manner.
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Here the scientists show that anion channelrhodopsins can be used to specifically and rapidly inhibit neural systems involved in Drosophila locomotion, wing expansion, memory retrieval and gustation, thus demonstrating their broad utility in the circuit analysis of behavior.

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Scientists use light to control the logic networks of a cell - UNC News

Scientists use light to control the logic networks of a cell - UNC News | Genetic Engineering Publications - GEG Tech top picks | Scoop.it

Engineering extrinsic disorder to control protein activity in living cells

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Proteins are the workhorse molecules of life. Among their many jobs, they carry oxygen, build tissue, copy DNA for the next generation, and coordinate events within and between cells. Now scientists have developed a method to control proteins inside live cells with the flick of a switch, giving researchers an unprecedented tool for pinpointing the causes of disease using the simplest of tools: light.

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Optogenetic activation of dopamine neurons in the ventral tegmental area induces reanimation from general anesthesia

Optogenetic activation of dopamine neurons in the ventral tegmental area induces reanimation from general anesthesia | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
National Academy of Sciences
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Here the authors report that selective optogenetic stimulation of ventral tegmental area (VTA) dopamine neurons in mice produces a powerful arousal response sufficient to restore conscious behaviors, including the righting reflex, during continuous, steady-state general anesthesia. Although previous studies found that VTA dopamine neurons do not appear to play a central role in regulating sleep–wake transitions, their findings demonstrate that selective stimulation of these neurons is sufficient to induce the transition from an unconscious, anesthetized state to an awake state. These results suggest that VTA DA neurons play a critical role in promoting wakefulness.

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A light-inducible CRISPR-Cas9 system for control of endogenous gene activation - Nature Chemical Biology - Nature Publishing Group

A light-inducible CRISPR-Cas9 system for control of endogenous gene activation - Nature Chemical Biology - Nature Publishing Group | Genetic Engineering Publications - GEG Tech top picks | Scoop.it



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The authors engineered a light-activated CRISPR-Cas9 effector (LACE) system that induces transcription of endogenous genes in the presence of blue light. This was accomplished by fusing the light-inducible heterodimerizing proteins CRY2 and CIB1 to a transactivation domain and the catalytically inactive dCas9, respectively. The versatile LACE system can be easily directed to new DNA sequences for the dynamic regulation of endogenous genes.


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New neuroscience tools that are identifying the sleep-wake circuit

New neuroscience tools that are identifying the sleep-wake circuit | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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In the last decade, new technologies such as optogenetics, chemogenetics and the CRISPR-Cas system have begun to transform how biologists understand the finer details associated with sleep-wake regulation. Here, the authors detail how some of the newest technologies are being applied to understand the neural circuits underlying sleep and wake.

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Optogenetic termination of ventricular arrhythmias in the whole heart: towards biological cardiac rhythm management 

Optogenetic termination of ventricular arrhythmias in the whole heart: towards biological cardiac rhythm management  | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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Current treatments of ventricular arrhythmias rely on modulation of cardiac electrical function through drugs, ablation or electroshocks, which are all non-biological and rather unspecific, irreversible or traumatizing interventions. Optogenetics, however, is a novel, biological technique allowing electrical modulation in a specific, reversible and trauma-free manner using light-gated ion channels. The aim of this study was to investigate optogenetic termination of ventricular arrhythmias in the whole heart.

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An open-hardware platform for optogenetics and photobiology

An open-hardware platform for optogenetics and photobiology | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
In optogenetics, researchers use light and genetically encoded photoreceptors to control biological processes with unmatched precision.
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Here, the scientists engineer the Light Plate Apparatus (LPA), a device that can deliver two independent 310 to 1550 nm light signals to each well of a 24-well plate with intensity control over three orders of magnitude and millisecond resolution. Signals are programmed using an intuitive web tool named Iris. All components can be purchased for under $400 and the device can be assembled and calibrated by a non-expert in one day.

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Photoactivatable CRISPR-Cas9 for optogenetic genome editing - Nature Biotechnology

Photoactivatable CRISPR-Cas9 for optogenetic genome editing - Nature Biotechnology | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
The genome editing activity of CRISPR-Cas9 can be switched on and off by light using split Cas9 fragments fused tophotoinducible dimerization domains.
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Here, the authors describe an engineered photoactivatable Cas9 (paCas9). In response to blue light irradiation, paCas9 expressed in human embryonic kidney 293T cells induces targeted genome sequence modifications through both nonhomologous end joining and homology-directed repair pathways.


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Mind-controlled transgene expression by a wireless-powered optogenetic designer cell implant - Nature Communications

Mind-controlled transgene expression by a wireless-powered optogenetic designer cell implant - Nature Communications | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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Scientists report the design of a synthetic mind-controlled gene switch that enables human brain activities and mental states to wirelessly programme the transgene expression in human cells.


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